Just before his death, Ryan informs Jack that Atlas had been controlling him with the use of the words 'Would you kindly?' a trigger phrase which would make Jack obey any order without question, and it was indeed Jack who hijacked and crashed the aeroplane he was traveling on, under Atlas' orders (and under the influence of the 'would you kindly?' phrase).Ītlas then reveals to Jack his true identity-that of Frank Fontaine, an ex-mobster and smuggler, believed by most of Rapture's population to be dead. He then proceeds to bludgeon Ryan to death with his own Golf club. Despite encountering many problems along the way, Jack hunts Ryan down, and corners him in his office in the Rapture Control Centre. In an act of revenge, Atlas then asks Jack to assist him in the assassination of Andrew Ryan. Unfortunately, Atlas' family are killed in an explosion triggered by splicers under the command of Andrew Ryan, the founder and ruler of Rapture. Jack is guided through Rapture by Atlas, a working-class Irishman, who asks for Jack's assistance in the rescue of his wife, Moira, and his son, Patrick, (both of whom are non-existant, though this is not revealed until after a large portion of the game) who are trapped in an area of Rapture known as 'Neptune's Bounty,' in return for his help. Whilst in the metropolis, Jack is forced to use a number of gene-altering substances known as plasmids, which he uses to protect himself. Jack enters the bathysphere, and pulls the lever, which takes him down to the underwater city of Rapture. As Jack heads down the stairs, passing several works of art, along with three metal seals, each with their own separate word ' art,' ' industry' and ' science' inscribed on them, he notices a bathysphere, with Django Reinhardt's version of ' La Mer' playing inside it. Whilst inside the lighthouse, Jack sees a Statue of Andrew Ryan, along with a banner directly below it, with the words 'NO GODS OR KINGS.

Jack is the only survivor, and he swims towards the only land in sight, a mysterious lighthouse, which seems to serve no purpose being there. Prior to his unwilling arrival in Rapture, he was a passenger aboard an airplane (Apollo Air Flight DF-0301 to be specific), which crashed in the middle of the Atlantic ocean. Jack, also known as Jack Ryan is the primary protagonist of BioShock, whom the player controls throughout the game.

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